Publications
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Preprints
Sourabh Palande, Joshua AM Kaste, Miles D Roberts, Kenia Segura Aba, Carly Claucherty, Jamell Dacon, Rei Doko, Thilani B Jayakody, Hannah R Jeffery, Nathan Kelly, Andriana Manousidaki, Hannah M Parks, Emily M Roggenkamp, Ally M Schumacher, Jiaxin Yang, Sarah Percival, Jeremy Pardo, Aman Y Husbands, Arjun Krishnan, Beronda L Montgomery, Elizabeth Munch, Addie M Thompson, Alejandra Rougon-Cardoso, Daniel H Chitwood, Robert VanBuren. "The topological shape of gene expression across the evolution of flowering plants." bioRxiv preprint bioRxiv:10.1101/2022.09.07.506951(2022).
Published in: bioRxiv preprint [Plant Biology]
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Mingzhe Li, Sourabh Palande, Lin Yan, and Bei Wang. "Sketching merge trees for scientific data visualization." arXiv preprint arXiv:2101.03196 (2021).
Published in: arXiv preprint [cs.CG]
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Journal Articles
Robert VanBuren, Alejandra Rougon-Cardoso, Erik J. Amézquita, Evelia L. Coss-Navarrete, Aarón Espinosa-Jaime, Omar Andres Gonzalez-Iturbe, Alicia C. Luckie-Duque, Eddy Mendoza-Galindo, Jeremy Pardo, Guillermo Rodríguez-Guerrero, Pablo Y. Rosiles-Loeza, Marilyn Vásquez-Cruz, Selene L. Fernandez-Valverde, Tania Hernández-Hernández, Sourabh Palande, and Daniel H. Chitwood. "Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics." The Plant Cell, vol. 34, no. 7 (2022): e1.
Published in: The Plant Cell
Code available here: Demo available here: .
Rathore, Archit, Nithin Chalapathi, Sourabh Palande, and Bei Wang. "TopoAct: Visually exploring the shape of activations in deep learning." In Computer Graphics Forum, vol. 40, no. 1, pp. 382-397. 2021.
Published in: Computer Graphics Forum
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Osting, Braxton, Sourabh Palande, and Bei Wang. "Spectral sparsification of simplicial complexes for clustering and label propagation." Journal of Computational Geometry 11, no. 1 (2020): 176-211.
Published in: Journal of Computational Geometry (JoCG)
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Palande, Sourabh, Vipin Jose, Brandon Zielinski, Jeffrey Anderson, P. Thomas Fletcher, and Bei Wang. "Revisiting Abnormalities in Brain Network Architecture Underlying Autism Using Topology-Inspired Statistical Inference." Brain Connectivity 9, no. 1 (2019): 13-21.
Published in: Brain Connectivity
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Conference Papers
Rathore, Archit, Sourabh Palande, Jeffrey S. Anderson, Brandon A. Zielinski, P. Thomas Fletcher, and Bei Wang. "Autism classification using topological features and deep learning: A cautionary tale." In International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 736-744. Springer, Cham, 2019.
Published in: International Conference on Medical Image Computing and Computer-Assisted Intervention
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Anderson, Keri L., Jeffrey S. Anderson, Sourabh Palande, and Bei Wang. "Topological Data Analysis of Functional MRI Connectivity in Time and Space Domains." In Connectomics in neuroImaging: second international workshop, CNI 2018, held in conjunction with MICCAI 2018, Granada, Spain, September 20, 2018: proceedings. CNI (Workshop)(2nd: 2018: Granada, Spain), vol. 11083, p. 67. NIH Public Access, 2018.
Published in: Connectomics in NeuroImaging: Second International Workshop, CNI 2018
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Wong, Eleanor, Sourabh Palande, Bei Wang, Brandon Zielinski, Jeffrey Anderson, and P. Thomas Fletcher. "Kernel partial least squares regression for relating functional brain network topology to clinical measures of behavior." In 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), pp. 1303-1306. IEEE, 2016.
Published in: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)
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Dissertation
